virSEAK - FOR SARS-CoV-2 SEQUENCING ANALYSIS
INCLUDING BRITISH AND SOUTH AFRICAN VARIANT

virSEAK

virSEAK offers quick and convenient comparison of your SARS-CoV-2 sequence to the available sequences. After a personalized setup with your kit, simply load fastq- or fasta data and obtain an aligned sequence with variants.
Additionally, your sequence will be assigned to a type based on frequently mutated positions. Frequencies and tracks for the types are also handily available.

New: virSEAK now also automatically checks whether your sequence is identical to the British SARS-CoV-2 variant B.1.7.7, the South African variant B.1.351 or whether it contains their common spike protein variant N501Y.

Also, we are optimizing the tool for high-throughput NGS sequencing with automated import and export functions and customizable transfer of sequence.

  • HIGHLIGHTS

     

    virSEAK - installable version:

    • easy import of either raw fastq or preprocessed fasta sequencing files
    • automatic alert if sequence is the British or South African version or if the mutation N501Y is contained
    • check for other variants with frequencies
    • get an assignment to a subtype
    • compare subtypes, counts and locations of findings, ...
    • export sequence and variants
    • results are stored
    • fully automated high-throughput sequencing with customizable transfer of sequence
    • automatic reporting system with public alerts for known and new virus variants in real time according to requirements

    Contact us now for a free trial license!

     

     

    virSEAK - freely accessible online version:

    • copy and paste your sequence or load a fasta file
    • automatic alert if sequence is the British or South African version or if the mutation N501Y is contained
    • check for other variants with frequencies
    • get an assignment to a subtype
    • compare subtypes, counts and locations of findings, ...
    • fully automated high-throughput sequencing with customizable transfer of sequence
    • automatic reporting system with public alerts for known and new virus variants in real time according to requirements

    Try it for yourself at https://varSEAK.bio/virus/ !

     

virSEAK - installable version:

  • easy import of either raw fastq or preprocessed fasta sequencing files
  • automatic alert if sequence is the British or South African version or if the mutation N501Y is contained
  • check for other variants with frequencies
  • get an assignment to a subtype
  • compare subtypes, counts and locations of findings, ...
  • export sequence and variants
  • results are stored
  • fully automated high-throughput sequencing with customizable transfer of sequence
  • automatic reporting system with public alerts for known and new virus variants in real time according to requirements

Contact us now for a free trial license!

virSEAK - freely accessible online version:

  • copy and paste your sequence or load a fasta file
  • automatic alert if sequence is the British or South African version or if the mutation N501Y is contained
  • check for other variants with frequencies
  • get an assignment to a subtype
  • compare subtypes, counts and locations of findings, ...
  • fully automated high-throughput sequencing with customizable transfer of sequence
  • automatic reporting system with public alerts for known and new virus variants in real time according to requirements

Try it for yourself at https://varSEAK.bio/virus/ !