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virSEAK - FOR SARS-CoV-2 SEQUENCING ANALYSIS
INCLUDING BRITISH AND SOUTH AFRICAN VARIANT

virSEAK

virSEAK offers quick and convenient comparison of your SARS-CoV-2 sequence to the available sequences. After a personalized setup with your kit, simply load fastq- or fasta data and obtain an aligned sequence with variants.
Additionally, your sequence will be assigned to a pangolin lineage (e.g. B.1.1.7) and a GISAID clade (e.g. L).
virSEAK also automatically checks whether your sequence contains the spike protein variants N501Y and or E484K.

Coverage and Quality values are shown, including: required-, absolute-, average- and median coverage, % of “wild type” and “N” bases. A quality indicator shows if the quality satisfies the defined quality thresholds.

Also, the tool is optimized for high-throughput NGS sequencing with automated import and export functions and customizable transfer of sequence. Easily create multi-fasta files to improve the reporting to a central reporting office for surveillance of epidemiological situation and spread of mutations (e.g. for Germany the Robert Koch Institut).

New: virSEAK now offers surveillance functions for rising lineages and variants of SARS-CoV-2. Please contact us to obtain your own system.

  • HIGHLIGHTS

     

    virSEAK - installable version:

    • easy import of either raw fastq or preprocessed fasta sequencing files
    • high-throughput NGS sequencing with automated batch import and export
    • automatic alert if the mutation(s) N501Y and/or E484K are contained
    • get an assignment to a Pangolin lineage and a GISAID clade
    • check for other variants with frequencies
    • compare subtypes, counts and locations of findings, ...
    • export sequence and variants (with meta information, in fasta and/or csv format)
    • results are stored
    • fully automated high-throughput sequencing with customizable transfer of sequence

    Contact us now for a free trial license!

     

     

    virSEAK - freely accessible online version:

    • New: surveillance functions for rising lineages and variants
    • copy and paste your sequence or load a fasta file
    • automatic alert if sequence is the British, South African or Brazilian version or if the mutation(s) N501Y and or E484K are contained
    • check for other variants with frequencies
    • get an assignment to a lineage and clade

    Try it for yourself at https://varSEAK.bio/virus/ !

     

virSEAK - installable version:

  • easy import of either raw fastq or preprocessed fasta sequencing files
  • high-throughput NGS sequencing with automated batch import and export
  • automatic alert if the mutation(s) N501Y and/or E484K are contained
  • get an assignment to a Pangolin lineage and a GISAID clade
  • check for other variants with frequencies
  • compare subtypes, counts and locations of findings, ...
  • export sequence and variants (with meta information, in fasta and/or csv format)
  • results are stored
  • fully automated high-throughput sequencing with customizable transfer of sequence

Contact us now for a free trial license!

virSEAK - freely accessible online version:

  • New: surveillance functions for rising lineages and variants
  • copy and paste your sequence or load a fasta file
  • automatic alert if sequence is the British, South African or Brazilian version or if the mutation(s) N501Y and or E484K are contained
  • check for other variants with frequencies
  • get an assignment to a lineage and clade

Try it for yourself at https://varSEAK.bio/virus/ !