varSEAK Online - GLOBAL DATABASE,
SPLICE SITE PREDICTION AND virSEAK

Watch our tutorial for the Splice Site Prediction Tool!

varSEAK Online

varSEAK Online – available at www.varSEAK.bio – is the publicly accessible part of the varSEAK database, including our Splice Site Prediction Tool and virSEAK for SARS-CoV-2 analysis. Browse varSEAK Online to view variants, classifications and summarized information from the varSEAK global database as well as public databases.


varSEAK Online is completely free of charge - try it now!

Use the Splice Site Prediction Tool to check variants for a potential effect on splicing with an accuracy of over 96%.  On top of that, a precompiled C library is available for you to include JSI's SSP 2.0 in your analysis pipeline.

New: the virSEAK tool offers an overview over variants and the different types of SARS-CoV-2. Load your fasta sequence to get an alignment, assignment to a type, frequencies, number and locations of findings for your sequence and its variants.

  • HIGHLIGHTS

    • Variant Table: Search for a gene and find all variants of a gene in one clearly organized table, including:
      • important data from and direct links to ClinVar, ClinVitae, Cosmic, ExAc, dbSNP and 1000 Genomes Project
      • newly submitted variants and classifications found by varSEAK users (uploaded in real time)
    • SSP: Check a variant for effects on splicing:
      • graphical display, Splice Site Prediction Score, Class and summarized prediction taking into account all surrounding potential splice sites
      • including the ENT score from MaxEntScan for further comparison

     

    • virSEAK: JSI's SARS-CoV-2 Tool
      • graphical display of virus genome features and sites of variation including frequencies
      • overview over variants of SARS-CoV-2 and their frequencies
      • overview of frequent types of SARS-CoV-2, their frequencies and locations of findings
      • align your own sequence to obtain variants and an assignment to a type

     

     

    Get started at www.varSEAK.bio !

     

  • PRODUCT BROCHURE

    Download our product brochure and
    find out more about our products!

    varSEAK Brochure


  • Variant Table: Search for a gene and find all variants of a gene in one clearly organized table, including:
    • important data from and direct links to ClinVar, ClinVitae, Cosmic, ExAc, dbSNP and 1000 Genomes Project
    • newly submitted variants and classifications found by varSEAK users (uploaded in real time)
  • SSP: Check a variant for effects on splicing:
    • graphical display, Splice Site Prediction Score, Class and summarized prediction taking into account all surrounding potential splice sites
    • including the ENT score from MaxEntScan for further comparison
  • virSEAK: JSI's SARS-CoV-2 Tool
    • graphical display of virus genome features and sites of variation including frequencies
    • overview over variants of SARS-CoV-2 and their frequencies
    • overview of frequent types of SARS-CoV-2, their frequencies and locations of findings
    • align your own sequence to obtain variants and an assignment to a type

 

 

Get started at www.varSEAK.bio !

Download our product brochure and
find out more about our products!

varSEAK Brochure