Public SNP DBs

Please note before download:

  • These installation packages can be used for new SEQUENCE Pilot installations as well as to update already existing SEQUENCE Pilot installations.
  • The Public SNP DBs only can be used for the SEQUENCE Pilot modules SEQNEXT, SEQPATIENT and SEQARRAY and in case a corresponding genome (hg19 / hg38) is installed.
  • The installation packages v5.2.0 and v5.3.0 are for SEQUENCE Pilot versions 5.2.0 or higher.
  • The installation packages v5.2.0 and v5.4.0 are for SEQUENCE Pilot versions 5.3.0 or higher.
  • The installation package v5.2.0 includes the databases dbSNP, 1000 GenomesClinVar, ClinVitae, ExAC and gnomAD (for hg38 1000 Genomes, ExAC and gnomAD are not available).
  • The installation package v5.3.0 includes the databases dbSNP, ClinVar, ExAC and gnomAD (for hg38 ExAC is not available).
  • The installation package v5.4.0 includes the databases dbSNP, ClinVar, ExAC and gnomAD (for hg38 ExAC is not available).

Download from our Website

Public SNP DB
SEQPILOT VERSION
SIZE
DATE
DOWNLOAD
Public SNP DB
hg19-GenomeVarDB-v5.6.0
SEQPILOT VERSION
5.3.0 or higher
SIZE
34.6 GB
DATE
30-June-2023
Public SNP DB
hg38-GenomeVarDB-v5.6.0
SEQPILOT VERSION
5.3.0 or higher
SIZE
38.8 GB
DATE
30-June-2023

Installation

Update:

  • Delete the old Public SNP DBs of your SEQUENCE Pilot installation first. These are the folders GenomeDBVar and GenomeVar of the directory SeqPilot\GeneFiles.
  • Unzip the downloaded file into the directory SeqPilot\GeneFiles of your SEQUENCE Pilot installation.
  • After the installation the folders GenomeDBVar and GenomeVar should be shown up again in the directory SeqPilot\GeneFiles.

New installation:

  • Unzip the downloaded file into the directory SeqPilot\GeneFiles of your SEQUENCE Pilot installation.
  • After the installation the folders GenomeDBVar and GenomeVar should be shown up in the directory SeqPilot\GeneFiles.

 

Linkouts

With SEQUENCE Pilot version 5.5.0, there is a file named 'Linkouts.ini' placed in the 'bin' folder of your installation. This file determines the websites available in the 'web Ref' context menu within SEQUENCE Pilot. It's important to know that this file can be edited individually by users. Consequently, it won't be updated automatically in future SEQUENCE Pilot updates. This measure is taken to protect any manual edits made by users from being overwritten.

Occasionally, we might introduce new versions of this file to include frequently requested websites.
If you've manually edited your 'Linkouts.ini' file, it's crucial not to replace your own file with this one.
Instead, use a text editor to add new entries for the additional websites in your edited 'Linkouts.ini' file.

FILE
SIZE
DATE
DOWNLOAD
FILE
Linkouts.ini
SIZE
3.5 kb
DATE
10-January-2024