Public SNP DBs

Please note before download:

  • These installation packages can be used for new SEQUENCE PILOT installations as well as to update already existing SEQUENCE PILOT installations.
  • The Public SNP DBs only can be used for the SEQUENCE PILOT modules SEQNEXT and SEQPATIENT and in case a corresponding genome (hg19 / hg38) is installed.
  • The installation packages v2.0 are for SEQUENCE PILOT versions 4.2 and 4.3, while the installation packages v4.0 are for SEQUENCE PILOT versions 4.4 and higher.
  • The installation packages v2.0 include the databases: dbSNP, 1000 Genomes, ClinVar, CLINVITAE and COSMIC (for hg38 1000 Genomes is not available).
  • The installation packages v4.0 include the databases dbSNP, 1000 Genomes, ClinVar, CLINVITAE, COSMIC, ExAC and gnomAD (for hg38 1000 Genomes, ExAC and gnomAD are not available).

Download from our ftp server (recommended)

All data available on this website can alternatively be downloaded from our ftp-server. This is recommend especially for the download of big files, because the download can be restarted in case there is an interruption.

Download from our Website

Public SNP DB
SEQPILOT VERSION
SIZE
DATE
DOWNLOAD
Public SNP DB
hg19-GenomeVarDB-v4.0
SEQPILOT VERSION
4.4 and higher
SIZE
14.5 GB
DATE
20-November-2017
Public SNP DB
hg38-GenomeVarDB-v4.0
SEQPILOT VERSION
4.4 and higher
SIZE
10.0 GB
DATE
20-November-2017
Public SNP DB
hg19-GenomeVarDB-v2.0
SEQPILOT VERSION
4.2 and 4.3
SIZE
6.7 GB
DATE
19-March-2015
Public SNP DB
hg38-GenomeVarDB-v2.0
SEQPILOT VERSION
4.2 and 4.3
SIZE
3.8 GB
DATE
19-March-2015

Installation

Update:

  • Delete the old Public SNP DBs of your SEQUENCE PILOT installation first. These are the folders GenomeDBVar and GenomeVar of the directory SeqPilot\GeneFiles.
  • Unzip the downloaded file into the directory SeqPilot\GeneFiles of your SEQUENCE PILOT installation.
  • After the installation the folders GenomeDBVar and GenomeVar should be shown up again in the directory SeqPilot\GeneFiles.

New installation:

  • Unzip the downloaded file into the directory SeqPilot\GeneFiles of your SEQUENCE PILOT installation.
  • After the installation the folders GenomeDBVar and GenomeVar should be shown up in the directory SeqPilot\GeneFiles.