- The download packages only should be used for new SEQUENCE PILOT installations. Never install a genome in an already existing one.
- For hg19 and hg38 please decide first which references (ENSG or NCBI) you want to use and download only one.
- In case of using our SEQUENCE PILOT module SEQNEXT please also install the corresponding GenomeCompact for using our Genome Mapping function. A genome mapping can be done to filter background/homologies. It is recommended for big panels.
- Known Gene Lists of an existing SEQUENCE PILOT installation never should be replaced by new ones. This can result in, that already analysed data can not longer be displayed correctly. Therefore please always contact our support first before installing any files!
- To ensure that all files are downloaded correctly, we provide md5 checksums for the big files. Therefore after download, please verify the integrity of the downloaded file, i.e. whether it is complete and uncorrupted. To do so, you may use the md5 checksum provided (respective link). Search for md5 checksum on the web to find suitable verification tools. Within the verification tool, browse and select the downloaded file and let the tool compute the checksum. If the two checksums differ, you have to download the file again.
All data available on this website can alternatively be downloaded from our ftp-server. This is recommend especially for the download of big files, because the download can be restarted in case there is an interruption.
- use the following link ftp://ftpsrv.jsi-medisys.de to access out ftp server
- login with user SeqPilotData and password SeqPilot
For module SEQNEXT (or SEQPATIENT and SEQNEXT in one installation):
For module SEQPATIENT only:
- Execute the downloaded file and follow the installation instructions. As destination directory please select the folder GeneFiles of your SEQUENCE PILOT installation (default: C:\SeqPilot\GeneFiles).
- After the installation the new folder Genome is available in your directory SeqPilot\GeneFiles, containing the corresponding genome (hg19 and / or hg38).
For module SEQNEXT and software version 4.4.0 or higher only:
- Execute the downloaded file and follow the installation instructions. As destination directory please select the folder Genome of your SEQUENCE PILOT installation (default: C:\SeqPilot\GeneFiles\Genome).
- After the installation the new folder GenomeCompact is available in your directory SeqPilot\GeneFiles\Genome\hg19 and / or SeqPilot\GeneFiles\Genome\hg38.
For modules SEQNEXT and SEQPATIENT only, to additionally deposit the newest known genes version from 2020-06-05 to an already existing genomes (hg19 and hg38).
Before you want to update, please contact the SEQUENCE PILOT support first!