SARS-CoV-2 NGS data analysis in SEQNEXT v5.2.0 and virSEAK

We are happy to announce that SEQNEXT Version 5.2.0 has been improved for analysis of Virus NGS data.

In addition, we released the new tool virSEAK on our free varSEAK Online website.

Load your viral NGS data (fastq- or bam-files) into


  • Mapping (BWA) & Alignment (Smith-Waterman)

  • Variant Calling

  • Reporting (paper, pdf, txt, vcf…)


and further transfer your SARS-CoV-2 sequences to virSEAK for

  • Assignment to different SARS-CoV-2 types

  • Compare subtypes, frequencies, counts and locations (countries) of findings, ...


Coming soon:

varSEAK Pilot for the complete analysis in one system (from loading fastq-/bam-files to final results)


If you are interested in learning more about SARS-CoV-2 NGS data analysis with our software tools SEQNEXT, virSEAK and varSEAK Pilot, please contact us.