Load your viral NGS data (fastq- or bam-files) into
Mapping (BWA) & Alignment (Smith-Waterman)
Reporting (paper, pdf, txt, vcf…)
and further transfer your SARS-CoV-2 sequences to virSEAK for
Assignment to different SARS-CoV-2 types
Compare subtypes, frequencies, counts and locations (countries) of findings, ...
varSEAK Pilot for the complete analysis in one system (from loading fastq-/bam-files to final results)